14a7f0de1dc454b788bc8fb9b25d80299d97c1bf
16
Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 amosblomqvist
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1b50013551 |
extraction cleanup: events ledger dies, markdown source view, auditor-as-linker (2026-09-27 rulings)
The graph becomes raw reasoning chains only. Quiz outcomes and understanding observations are no longer formalized; assessment moves to the future practice module. Events ledger removed end-to-end: LedgerEvent/LedgerEventKind/ UnderstandingLevel/ExtractionAttribution/AuditResult.dropped and snapshot nodeObservations deleted from contracts; quizEvent builder and the events step of mergeFindings gone; appendEvent/readEvents dropped from the port and store; LEDGER_FILES loses events.jsonl with a one-time purge of a stale file next to the nodes ledger; graph-deletion and the delete dialog lose event purge + quiz-answer impact counts; GraphSessionProposition becomes a pure birth list. Whole-session markdown source view: new core/session-markdown.ts is the shared formatting engine (id-anchored speaker blocks, quiz/ recall/question blocks, tool one-liners) — the extractor's prompt view and the future user-facing export render from one engine. Coverage fingerprints deliberately stay on the old line format (content-hash semantics; re-formatting never re-opens covered history). The whole session goes to the extractor — no phase cut. Auditor refocused as the identity linker: never sees the source; explores the graph via new auditor-specific tools in agent/tools/graph.ts (find — glob over name/statement/aliases; list_sessions; list_propositions with full statement text; no timestamps) instead of an injected full-graph dump; equivalence bias — paraphrases merge, only genuinely distinct propositions stay apart; no drop channel, the extractor is fully trusted; may draw bridging edges (typed follows/supports) between existing nodes and the batch, resolved by the merger with chat-scoped message-less provenance. Agentic loop, maxTurns 16. UI: the node detail card gains an edges section above the sessions list (follows-from / supported-by / what-follows / what-it-supports, rendered only when present, click-to-select neighbors); the understanding-note chips are gone. Prober list_propositions reworded to what a session covered — names only, no levels. docs/architecture.md + README updated to the as-built pipeline. Gates: typecheck, 1059/1059, lint, build. |
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amosblomqvist
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73027f49bf |
Cost channel cull: the cluster-naming fold dies — two stages, two channels
Off UI's d651f93 flag (displayCostTotals already isolates the display to extraction + audit; the naming stage row and naming runs were filtered out client-side). This culls the server side of the same ruling. THE STANDING RULING, REVERSED BY ITS OWN PREMISE: NamingRunUsage / readNamingRuns / appendNamingUsage were kept at the wave-7 namer kill ONLY because cost-summary's HISTORICAL naming stage read them. With the fold culled, that premise dies — so the whole ledger read path goes too, following the wave-7 embeddings precedent chain: consumer-less ledger seams are deleted, and the on-disk naming-runs.jsonl stays INERT (real trees keep their historical spend bytes; they are simply not displayed anywhere — the same treatment as historical stages.embedding spend). - core/cost-summary.ts: two channels in (chat + notes front doors), two stages out; RecentRun.kind collapses to "extraction" (labels field gone); CostSummaryInput.naming gone; totalDollars = extraction + audit. - ports/store/contracts/config: appendNamingUsage + readNamingRuns ports, store impls + guards, the NamingRunUsage interface, and LEDGER_FILES.namingRuns die. graphRevision no longer counts the file (a smaller revision value is harmless — reads never compare). - components/graph-view.tsx (mechanical, flagged): the defensive .filter(run.kind !== "naming") guards a kind that no longer exists. - Tests: cost-summary's both-channels fold pins; the naming fixtures and the appendNamingUsage store pin die with the seams. |
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amosblomqvist
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d1b46132b9 |
Wave 7 close-out: the embedding ledger seam dies; notes birth via mapping lines
Part 1 — the ledger + remnants interlude (master-dispatched, owner ruling 2026-09-23: nothing configures the graph beyond chat models): - The embedding ledger surface is gone: readEmbeddings/writeEmbeddings ports, the EmbeddingsLedger contract, EMBEDDINGS_FILE (config, store impls, graphRevision source list), and graph-deletion's vector-pruning step. On-disk data files stay untouched (inert history). - The extraction embedder seam dies wholesale: ExtractionPipelineDeps drops the embedder dep (chat-handler + backfill/import-notes stubs go with it), the 'embedding' phase leaves ExtractionPhase, the usage capture/persist helpers die, and stages.embedding leaves ExtractionRunUsage (historical records keep their shape — reads are lenient). Extraction is two stages again, like the local-embedder era. - Consumer-less remnants: latestQuizOutcomes + QUIZ_EVENT_KINDS, clusterContentId, matchClusterLabelings + Community + ClusterLabeling, the readClusterLabels/appendClusterLabel port seams + store impls + LEDGER_FILES.clusterLabels. NamingRunUsage/readNamingRuns STAY (standing ruling — the cost pill renders historical naming spend); clusterHue + MIN_CLUSTER_SIZE stay (live). - The 'labeler' role dies: BACKGROUND_MODEL_ROLES, ROLE_SLOT, ModelRole, the catalog pin projections, and the UI roster strings. RolePins keys shrink with the union. The notes birth fallback (owner-approved 2026-09-23, surfaced by the interlude's live smoke: production notes imports create provenance-EMPTY nodes (importNotes passes messages: null — the file's anchor is the mapping line), so the provenance-only birth rule left every imported file unclustered and invisible to the prober's session list, against the locked file-birth ruling. A provenance-empty node now births under its FIRST mapping line's chatId (ledger order); only notes-born nodes ever hit the fallback (chat nodes always carry provenance; a re-encountered node's link-append re-opens the provenance rule). Deletion-safe: mapping lines of deleted chats are stripped alongside their provenance. Live-verified on port 3004: a fresh notes import clusters under its src_ id with the file path as the label, end to end with no embedder. 845/845 tests, typecheck/lint/build green. EOF ) |
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amosblomqvist
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3e263a18cc |
Graph pipeline cost metrics: capture naming spend, fold all channels, cost pill + panel
- Cluster namer bills the money channel now: per-step usage + model captured via onStep, persisted as NamingRunUsage records to data/graph/naming-runs.jsonl (idempotent per startedAt; failed/aborted runs persist too — money spent either way). callUsage promoted to extraction.ts module scope for reuse. - core/cost-summary.ts: the pure fold behind the pill — chat runs, notes-source runs, and naming runs into stage totals (extraction / audit / naming) + newest-first recent runs. Dollars INFERRED read-time via prices.ts, never stored; unpriced models excluded-but-counted (render '—', never a silent zero); tokens always sum. - GET /api/graph/costs (src/server graphCosts composition, thin route). - Graph view: bottom-left cost pill (cumulative dollars headline) + expandable breakdown panel (stage rows with tokens secondary, recent runs with time/title/merged/cost); fetched on mount, refetched when a pipeline run finishes; merged into one bottom-left stack with the running-pipeline pills. - Tests: pure-fold suite, naming capture wiring (full importNotes -> naming path), store idempotency + strict reads. |
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amosblomqvist
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2678f04e7a |
feat: extraction coverage — message-granular ledger + token-batched runs (d132373 vision)
THE MESSAGE IS THE UNIT OF COVERAGE (vision-extraction-coverage.md): a per-chat append-only ledger (coverage.jsonl) records which messages the pipeline has extracted, by content fingerprint over exactly what the extraction view sees (one shared line builder — core/coverage.ts); the uncovered remainder is DERIVED at read time, never dual-tracked. A quiz answer merging into the asking message re-opens only that message; plan-block data-part attach never re-opens anything. - The trigger (turn-service) replaces every-3-quiz-answers with uncovered-tokens >= EXTRACTION.chunkTokens (4096) — quiz-less sessions extract too, content size is the honest signal. - runExtraction is now chunked: token-budgeted batches of the oldest uncovered consecutive messages (a tool call + result never split), each merged batch checkpointing its messages' coverage atomically — an abort or error loses at most the in-flight batch; merged batches stay covered. - Observation refs are batch-tagged (obs:<batchTag>:<sourceId>): re-runs of the same batch dedupe; a re-opened message's fresh understanding lands as a new event. Fixes the old obs:p1 position-collision. - New API: GET /api/graph/coverage (exact per-session derived coverage + running flags, most-uncovered first) and POST /api/graph/coverage/extract (manual run for one session, 409 while in flight). - Graph view chrome: the coverage button opens a panel with every session's covered/uncovered tokens and a per-session Extract button — the manual answer to aborted runs, errors, and dormant tails. Renders even when the graph is empty: an empty graph with uncovered sessions is exactly when it matters. Polls only while open. - Notes imports keep the whole-file checkpoint path (coverage undefined). - Tests: pure-core coverage suite (11), chunked-pipeline suite (3: multi-batch + no-op, abort-keeps-earlier-batches + remainder re-run, re-open alone + data-part invisibility), panel render suite (5); pendingQuizAnswers and its tests deleted as dead code. 486/486. Live-smoked on real GLM: manual extract of "teach me modal realism" ran one batch, wrote 4 coverage entries, panel flipped to "1.3k covered · complete" with the button disabled, graph refetched (nodes 11), usage persisted with real stats. |
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amosblomqvist
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f5edc7f0a5 |
Semantic topic clusters: local embeddings replace Louvain
Louvain only ever found the reasoning chains (the graph is disconnected by nature — every connected component became its own cluster) and edge-orphans could never join anything. Clusters are now RELATED TOPICS: propositions grouped by meaning. - Embedder (src/server/embeddings.ts): in-process transformers.js v4 running EmbeddingGemma-300M q8 (MTEB 68.4, ~300MB one-time download), MRL-truncated to 512d, "title: none | text:" prefix on 100% of inputs, L2-normalized so cosine = dot. Model/dim mismatch voids the ledger (full re-embed). Injected at the composition root — the agent layer never imports the server layer (architecture law). - Ledger (data/graph/embeddings.json): model + dim + vectors + the persisted cluster partition. Reclustering runs at the END of every embedding batch (post-merge hook, both front doors) — never per read (the agglomerative pass is ~1.5s at 338 nodes). - Clustering (src/core/semantic-clusters.ts): hand-rolled average-linkage agglomerative over cosine (npm HDBSCAN is an abandoned alpha). Stragglers stay singletons by default; attachStragglers is the all-in toggle. Threshold 0.60 swept on the real graph: 26 topics, 74/90 edge-orphans land in real topics, 10 stragglers. - Consumers (snapshot, settle, namer, replay) read the persisted partition — one cluster concept everywhere; core-survival label matching unchanged (20/26 topics kept labels). - Louvain retired: detectCommunities + graphology* deps deleted (graphology-louvain had leaked into the client bundle since the clusters wave); scripts/bench-graph.ts (dead FA2 bench) removed. - scripts/embed-graph.ts: backfill/cold-start (338 nodes in 150s including the one-time model download). |
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amosblomqvist
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0c14ea425d |
Option A: incremental anchored force layout, persisted server-side
The layout now EVOLVES instead of reshuffling on every extraction. A pure
core module (src/core/layout.ts) warm-starts forceAtlas2 from the positions
ledger (data/graph/positions.json, read-modify-write like sources.json,
updatedAt stamp for future live-physics conflict handling), re-blends every
previously-positioned node toward its anchor each iteration (retention 0.85
- old placements stay recognizable, strong forces still win), seeds new
nodes near their positioned neighbors, and seeds orphans on the rim outside
the core so they read as unconnected knowledge.
- Port/store: GraphStore.readPositions/writePositions; snapshot carries
positions when the ledger exists (optional - fresh graphs unchanged).
- Extraction pipeline settles synchronously after every merge (chat and
notes paths), before usage persist - the next /api/graph fetch already
reflects new nodes.
- View: the ledger IS the layout; the local one-shot FA2 pass survives
only as a fallback when no ledger exists.
- scripts/replay-layout.ts: simulates organic growth by replaying the
current 338-node graph one imported file at a time (real import order,
edges activate when both endpoints exist). Real run: 338 positions in
0.3s, 90-degree-0 orphans collecting at mean r=338 vs connected r=194.
- Also restores the cluster region fills (hull background colors) that
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amosblomqvist
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f0267a5fd9 |
Clusters phases B+C: labeling records, the naming call, snapshot payload
Core-survival labelings (vision section 1, DECIDED 2026-09-13): ClusterLabeling records in a new append-only ledger (data/graph/cluster-labels.jsonl), immutable, id = clu_ + sha256 of the sorted core so re-naming races and re-runs dedupe at the store seam. matchClusterLabelings (core/clusters.ts, pure): a community keeps a record's label while at least half its core survives in it; both sides single-successor (a split keeps one name; greedy by overlap, ties to the newer record). The namer (src/agent/subagents/cluster-namer.ts): ONE singular cheap LLM call (new 'labeler' role, glm-flash/low) names every new/changed community at once, given member names + statements (capped at 12 members per cluster). refreshClusterLabels runs POST-EXTRACTION (user-decided) from both front doors, fire-and-forget — naming failure never fails the run; refreshes serialize behind a chain so parallel imports never mint duplicate labels. import-notes.ts awaits clusterNamingSettled before exit. Payload: GraphSnapshot.clusters (>= MIN_CLUSTER_SIZE 3) joins detection with labelings at read time — claimed clusters carry the record's label and id; unlabeled ones carry a member-hash id and null label. Detection is deterministic so no memo in v1 (ms at current scale; revisit at vault scale). Tests (372/372): matcher half-rule/split/merge/greedy/tie cases; naming end-to-end through importNotes (one call, one record, claim on re-refresh), naming failure non-fatal; snapshot derivation with labeling join; 11 test pipelines now pin an explicit labeler seam. |
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amosblomqvist
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543cf33789 |
Notes front door: format-agnostic import into the graph pipeline
The same extractor→auditor→merger pipeline now runs over raw personal
notes in arbitrary formats (vision §1, DECIDED 2026-09-13):
- NotesSource records (data/graph/sources.json, deterministic id from
path hash → idempotent re-imports) play the chatId role in mappings,
checkpoints, and observation events; usage lands on the source record
(appendSourceUsage, idempotent per startedAt, kept across upserts).
- mergeFindings is chat-store-free: callers pass MergeSource
{messages, foldedAt} — sessions pass the chat record, notes pass
messages:null (no quiz-event rebuild; a deterministic rebuild needs
structured quiz tool parts).
- Second extractor prompt (NOTES_EXTRACTOR_INSTRUCTIONS) for general-
purpose extraction; understanding judges the AUTHOR's grasp. Auditor
wording input-agnostic. extract/audit share one generic runSubmitAgent.
- graphSnapshot.fileSources (srcId→filePath); notes sources render as
static path entries in the detail card (FileTextIcon, never a link).
- One shared pipeline instance (exported from chat-handler): same
single-flight registry, live status chips (label = file path), usage
accounting, and true abort for both front doors.
- Transport: POST /api/graph/import (multipart, 3-wide worker pool) +
Import notes… button in the graph view; scripts/import-notes.ts for
batch runs (concurrency 4).
- real-data-extraction/ gitignored (raw import sources never committed).
355/355 tests; typecheck, lint, build green.
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amosblomqvist
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9174cde55e |
Extraction observability: usage capture, live status payload, true abort (Wave 4)
Extraction is real spend and background work; the dock needs to see and stop it. User decisions: persist all cost data (chat record), per-stage usage granularity, and TRUE cancellation for abort. USAGE CAPTURE (live + persisted): - extraction.ts: per-call onStepFinish captures each billed step's usage (SDK LanguageModelUsage -> CallUsage: input/output/cache read+write/reasoning) into the registry's live per-stage usage (extractor/auditor; the merger is deterministic — no model call). - /api/graph/status runs now carry usage (model + steps per stage); cost/context folds are the consumer's (core/prices.ts — nothing stores dollars). - ChatRecord.extractions: append-only per-run usage log (mirrors the turns log): startedAt key, at, durationMs, merge stats when the merger ran, stages. Persisted on success AND failure — a failed run still spent money. Idempotent per startedAt; the list payload (ChatSummary) never leaks it. - EmissionStats moved to contracts/graph.ts (its contract home); core/graph.ts re-exports for existing importers. - Verified end-to-end against the real pipeline (backfill one chat): per-step token counts, reasoning tokens, and the auditor's growing prompt-cache reads captured and persisted. TRUE ABORT (the dock's abort button, user decision): - RunningExtraction owns one AbortController per run, shared across phases; abortExtraction(chatId) fires it and returns whether a run was aborted (idempotent no-op otherwise). The pending model call receives the signal — the provider cancels the request, spend stops. throwIfAborted() at phase boundaries ends runs aborted in sync gaps. - Abort is a deliberate stop, not a failure: same ledger discipline (nothing merged, nothing checkpointed, partial usage persisted) but the run reports zero emissions instead of throwing. Exported via src/server/observability.ts for master's /api/activity/abort route. - Tests: mid-run abort (hanging mock that rejects on the signal), live-accumulation + persisted-record assertions, store-seam idempotency, and the summary-payload leak guard. |
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amosblomqvist
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e944afebfc |
Understanding levels: closed five-word scale, schema-enforced
The extractor's per-session understanding notes were free-form strings;
the model freely appended em-dash justifications ('shaky — the learner
could state the headline distinction but calls the machinery behind it
foggy'), which overflowed the detail card's session rows and squeezed
the session names.
The note becomes a CLOSED named-word scale — solid / shaky / accepted /
resisted / not yet engaged (DECIDED 2026-09-08, no numbers) — enforced
by the zod enum in propositionSchema: a wrong-shaped note is rejected
at parse time and the agent retries. Justifications are dropped, not
stored (user decision: not necessary). Extractor and auditor
instructions updated to demand exactly one word.
Renderer: the session row keeps the session NAME as the main thing
(flex-1, truncates) and the level chip is bounded (max-w-28,
whitespace-nowrap, truncate) — overflow impossible even for legacy
prose notes in old ledgers.
Vision doc: §1 extractor bullet + event-ledger line updated; state
model line notes the five-class derivation was removed; amendments
table row added.
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amosblomqvist
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0fccbbe2ad |
Detail card: per-session understanding notes next to the session list
The extractor's per-proposition understanding observations (named-word scale: solid/shaky/accepted/...) were ledger data since the redesign, with no surface. This exposes them at read time and shows each session's note as a small chip on its session row in the node detail card — the per-session confidence history the user asked for, one observation per (node, chat), latest wins within a chat. - GraphSnapshot.nodeObservations: nodeId -> chatId -> note, built in graphSnapshot() from observation events (pure read-time join). - Sessions list rows: link + observation chip. - Session-relative judgments stay session-scoped: they render next to their session, never as node state (the state model stays pending). |
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amosblomqvist
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54f88f37e1 |
Strip the transitional node-state classes (2026-09-08)
The five-class NodeStateClass (taught/known/missed/dont-know/candidate) was transitional scaffelage from the 2026-09-02 redesign, deriving state by latest-quiz-wins — exactly what the philosophy rejects: understanding is inferred at read time from the real state model (still pending ideation), never encoded as quiz-derived classes. - contracts: NodeStateClass deleted; GraphSnapshot no longer carries nodeStates (objective graph + sessions only). - core: deriveNodeStates replaced by latestQuizOutcomes — the raw event fact (nodeId -> latest quiz kind), consumed ONLY by the teacher's graph-as-context selection, never by the home renderer. - graph-context: hotspot selection re-keyed to outcomes — groups are now 'Hotspots (last answer wrong or don-t-know) / Answered correctly / Never probed'. Same diagnostic selection, no state taxonomy. - graph-view: nodes render uniformly (accent color, size 8); the panel is search-only; the detail card's state badge is gone. Quiz outcomes remain ledger data for the future state model. Verified live (headless): uniform discs (single color/size, zero state pixels), search-only panel, card = name + statement + sessions, no console errors. |
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amosblomqvist
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bdd9cac2b7 |
Node schema pivot: short name (label) + full-precision statement; description dropped
With real extracted data, full-sentence statements as canvas labels proved unworkable: 10-line label blocks, illegible overprint clusters, bottom-edge clipping. Per the user's 2026-09-08 decision: - GraphNode/ExtractedProposition gain `name` — a very short, glanceable label (glossary-headword style: "Will to power"), presentational only: not unique, not identity, never precise. Set at creation; link-appends never change it (first line defines; labels stay stable across sessions). - `statement` keeps its full precision and becomes the identity anchor; the detail card shows it under the name. `description` is dropped. - Extractor coins the name (freshest session context); auditor carries it through on create, rewording only clearly unglanceable names; linked propositions keep the existing node's name. - Renderer: canvas label = name; search matches name + statement; detail card = name (bold) + statement (muted). - Store guard requires name (pre-pivot node lines are skipped as legacy); vision.md node-schema bullet + amendments table updated (2026-09-08). |
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amosblomqvist
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b07c907ffd |
Graph redesign: true propositions, follows/supports, auditor-owned identity (vision §1 minimal implementation)
The minimal implementation of the 2026-09-02 graph vision (docs/vision.md §1):
- contracts/graph.ts: every node is a TRUE proposition (statement is both
rendering label and identity key; required description; no kind, no name).
Edges are follows (derivable) / supports (grounds without entailing) with
message-granular provenance points {chatId, messageId}. Events reduce to
correct/miss/dont-know plus observation (understanding notes); no taught
events, no misconception kind.
- extraction.ts: extractor is TREE-BLIND (transcript only, no plan tree) and
free-form; auditor sees findings + the current graph, owns faithfulness and
identity (link-or-create verdict per proposition, recorded as linkTo);
transcriptView tags every line with its message id (provenance anchors).
- core/graph.ts merger: applies verdicts deterministically — linkTo appends
a link line (phrasings join aliases, provenance unions; reads merge by id),
absent creates; NO string matching anywhere. Quiz events rebuilt from tool
parts with attribution-only nodeId resolution; understanding notes become
observation events (obs:<sourceId>); mapping lines are the verdict audit
trail and make re-merges idempotent.
- deriveNodeStates: transitional — latest quiz event wins (known/missed/
dont-know, else candidate); taught unreachable until the state-model
ideation lands.
- graph-context.ts + 50-graph-context.md: follows chains, hotspot grouping,
state vocabulary updated for the new event kinds.
- graph-view.tsx: node label is the statement; detail shows statement +
description.
- tests: merger verdicts (link, no-string-match, cross-chat assertions),
tree-blind pipeline end-to-end, follows vocabulary in context tests.
276/276 green.
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amosblomqvist
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8a9497bf59 |
Split contracts.ts by domain: plan / graph / chat / jobs
Purely mechanical: src/core/contracts/{plan,graph,chat,jobs}.ts carry the
sections verbatim (graph = nodes + ledgers + extraction findings; jobs =
the async ack-and-steer protocol + tool results + demo bridge), and
contracts.ts becomes a re-exporting barrel so every existing import path
(@/src/core and ./contracts.ts) is unchanged.
Wave-2 lane ownership follows the split: the graph stream owns
contracts/graph.ts, the teacher stream owns contracts/jobs.ts — same-file
contract collisions between streams are structurally impossible now;
cross-domain schema changes go through master.
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